OBIS Steering Group
Approximately every year, OBIS hosts a meeting of the IODE Steering Group for OBIS (SG-OBIS) comprising Node managers and OBIS staff.
Meetings notes are on the OBIS web site from the seven meetings so far. The next meeting will be in November 2018 at Oostende, Belgium.
To extend and enrich the types of data that can be published to OBIS, the OBIS Data Content Enhancement Task Team (DataTT) devised a revision and extension to Darwin Core to handle events (e.g. trawls) and associated abiotic data (See Resources for the publication). There are current efforts to publish data using this new format. For example, the Australian node has published seabird observation datasets that incorporate sea and air measurements and bird behaviour observations. An instance of this is the RV Investigator Voyage IN2016_T02 Seabird Observations, Australia (2017) on the OBISAU IPT and online at OBIS.
Integrating biological data into AODN
The Australian Ocean Data Network (AODN) is the main portal to aggregated oceanographic data within Australia. It has been built using the architecture of the Integrated Marine Observing System (IMOS) facility and is dominated by physical datasets with a few key biological datasets that are projects funded by IMOS. What is missing is the integration of non-IMOS biological data can be integrated from ALA, GBIF and/or OBIS.
There are two major issues to solve
- Data flows to the international OBIS repository from ALA, GBIF and other sources are not direct, but must be via a regional OBIS node, e.g. OBIS Australia.
At this moment, the process to copy data from other aggregators or data sources into OBIS is a manual process
involving matching data elements to Darwin Core vocabularies, and taxanomic information to WoRMS (See Contributing data for details).
- AODN/IMOS uses the WFS OGC standard to publish data from a geospatial data server. The only forced conformance is the geometry object (point, line or polygon) with all other data elements being arbitary. On the other hand, OBIS data is packaged into a well defined zipped dataset via an IPT server using the Darwin Core vocabularies. There is no data streaming service from an IPT.
OBISAU has built a Geoserver mapping layer called dwc:marine_species. It is a potential method to get species data into the AODN portal. Subsetting the data can be achieved using a CQL filter and for the IN2016_T02 Seabird Observations, the CQL syntax is &CQL_FILTER=dwc:RESOURCE_LINK=%27http://ogc-act.csiro.au/ipt/resource?r=in2016_t02_wov%27
TDWG Data Quality Interest Group
Many tests that check the quality of biological data are informal, adhoc and under-applied and therefore can miss errors The TDWG Data Quality Interest Group has constructed a suite of tests and assertions that can be applied to a single record or a set of records. Examples are invalid or incomplete dates, geospatial outliers or bad coordinates, suspect depths or elevations, unknown or missing taxa values There will be presentations on this topic at the TDWG 2018 conference.
The first OBIS data portal was built from data harvested from its endorsed nodes about four times a year. The problem with this approach is that it can take 3-4 months before a new dataset appears at OBIS. GBIF on the other hand harvests data immediately once a dataset has been registered with them and within 24 hours it will appear on their data portal.
The OBIS 2.0 project has built a new portal With OBIS 2.0, new data is immediately processed (quality controlled), integrated in the central database and made available.
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